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Update similarity calc

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This commit is contained in:
Nikola Petrov
2025-03-09 15:14:21 +01:00
parent 1994e7ccb1
commit 266d250881
5 changed files with 73 additions and 56 deletions
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7
shared/inc/values/Similarity.hpp
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@@ -5,13 +5,14 @@ namespace Similarity
{
// float euclidean_distance(Dna *d1, Dna *d2); direct distance betwen vector. wont give 0 and 1
// float dot_product(Dna *d1, Dna *d2); doent return betwen 0 to 1
float cosine_similarity(Dna *d1, Dna *d2);
float cosine_similarity_int(Dna *d1, Dna *d2);
// float cosine_similarity(Dna *d1, Dna *d2);
// float cosine_similarity_int(Dna *d1, Dna *d2);
float hamming_distance(Dna *d1, Dna *d2);
float hamming_distance_without_seeds(Dna *d1, Dna *d2);
// float jaccard_index(Dna *d1, Dna *d2); // primerja unio genov naprimer gleda ce je gen za nebo isti z genom za barvo za liste, to nerabimo
// float levenshtein_distance(Dna *d1, Dna *d2); // odstranjen ker mi vrne iste podatke kot hamming distance ki je bolj enostaven za izracun
// float needleman_wunsch(Dna *d1, Dna *d2); used for bioinformatics and aligment. Dont need its aligned alredy
typedef float(simil_func)(Dna *d1, Dna *d2);
float calc_similarity(std::vector<Dna> &vec, simil_func f);
float calc_similarity(std::vector<Dna> &vec, simil_func f = hamming_distance_without_seeds);
}